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CellProfiler

CellProfiler is an open-source software that allows biologists to perform quantitative phenotype measurements from thousands of images without computer vision or programming training. The software has different version options, including stable, beta and nightly. Users can run the software by compiling through source code or using ready-made installation files.

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CellProfiler

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CellProfiler · Scientific Research & Computing

STARS1.1K
FORKS427
COMMITS—
CONTRIBUTORS147
VERSIONv5.0.0.dev
UPDATEDtoday
cell-biologyimage-analysisphenotypingResearchBSD-3-Clause
What can it do?
  • You make quantitative phenotype measurements over thousands of images without the need for programming knowledge.
  • You manage image analysis processes through stable or beta versions offered for different operating systems.
  • As a third-party module developer, you test module compatibility using nightly versions.
User reviews
  • ↓ NegativeGitHub Issue

    Installing CP developer's version on Mac OS 10.8.2 (with Homebrew)

    “Hello - I am trying to install the CP developer's version as outlined on under "Methods that work". However, I get an error close to the end of installing dependencies with Homebrew: Error: Failed executing: /bin/sh ./setup.sh /usr/local/CPhomebrew/Cellar/cellprofiler-dev/1…”

  • • NeutralGitHub Issue

    Rescale intensity relative to maximum intensity in image.

    “Currently, when loading an image, intensities are rescaled [based on the following criteria]( 1. A value provided by the user*. 2. The maximum intensity supported by the image, as defined in the image metadata. 3. The maximum value supported by the image data type**. Instead of…”

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