Nextflow
Nextflow is a scalable and portable workflow creation system based on the data flow programming model. The local machine can be run on HPC timers, cloud platforms, and Kubernetes. Conda supports managing software dependencies with various tools such as Docker and Singularity.
Nextflow
95nextflow-io · Scientific Research & Computing
- You design parallel and distributed transaction lines with the data flow model
- Run workflows on local machine, HPC, cloud services, or Kubernetes
- Manage software dependencies with Conda, Docker or Singularity
- ↑ PositiveHacker News
Nextflow: Data-Driven Computational Pipelines
“Pretty much everyone underestimates the complexity of workflow scheduling. This means like 99% of tools have had various random limitations and quirks that make them not applicable to a lot of use cases. This is something that people using these tools mostly never realize (and…”
- ↑ PositiveHacker News
Nextflow: Data-Driven Computational Pipelines
“I've considered using Nextflow for bioinformatics pipelines but have yet to take the plunge. At work, I develop a proteomics pipeline that is composed of huey¹ tasks (Python library; simple alternative to Celery) which either use subprocess to call out to some external tool, or…”
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